62 posts tagged with "seqera cloud"

Feature updates and improvements​

Data explorer​

• Separated Data Explorer data-link record permissions from file object permissions with the new data_link_object grant. Workspace members with View, Connect, or Launch roles can now download files and generate download URLs from data-links. Upload and delete file operations remain restricted to Maintain and above.

Feature updates and improvements​

Access control​

• Enabled GitHub App credentials for all workspaces.

Compute environments​

• Added security group name search to AWS drop-downs.

Pipelines​

• Surfaced launch-time settings, including profiles and syntax parser, in the run config tab.

Bug fixes​

Data explorer​

• Fixed IGV index file handling by presigning indexURLs independently.

Pipelines​

• Fixed the Nextflow syntax parser v2 toggle to seed from the saved launch config.
• Included syntaxParser in the workflow launch API response.
• Cleared stale main script launch errors.
• Fixed the launch form to skip the lineage request in user space.

Feature updates and improvements​

Pipelines​

• Exposed tower.launch.config.maxSize to frontend validators so launch configuration size limits stay aligned with the backend.

Bug fixes​

Pipelines​

• Added frontend validation of paramsText against its JSON-serialized size to align launch parameter limits with backend submission constraints.
• Added missing metadata, pipeline versioning, and data lineage fields to the workflow launch form summary.
• Fixed the workflow launch payload to always send lineage.enabled so the data lineage toggle setting persists correctly.

General​

• Fixed the workspace switcher to keep the search input focused during arrow-key navigation.
• Fixed background worker shutdown by draining workers before JedisPool shutdown to prevent dropped jobs.
• Fixed navigation switcher responsiveness.

Feature updates and improvements​

Compute environments​

• Added a configurable boot disk size for Azure Batch pools.
• Added r8idn, r8idb, m8idn, and m8idb instance families to the NVMe list.

Monitoring​

• Improved the JSON diff component with small refinements.

Pipelines​

• Added the Lineage ID to the Run Info page.

General​

• Introduced a panel search input and integrated it into the navigation switcher component.
• Improved workspace switch redirects to preserve the active sidebar section.

Bug fixes​

Access control​

• Fixed the audit event type for MANUAL-to-SCIM promotion.
• Kept the infinite-scroll drop-down open when clicking the search input.

Compute environments​

• Improved Entra robustness by adding equals/hashCode for credentials and making the managed identity regex case-insensitive.
• Deduplicated the compute environment entry in the launch drop-down.

Data Explorer​

• Made credentials a required field in the Add data repository form.
• Fixed the Data Explorer custom bucket E2E test to select credentials.

Monitoring​

• Fixed a referential integrity constraint violation when saving an audit log image bundle in H2.
• Replaced the word ID with IP in the audit logs table.
• Coalesced setAvailableCredits calls per organization.
• Coalesced stop events per organization using a Redis lock.
• Added a differential TTL and empty-result guard for the Metronome balance cache.
• Coalesced handleOrganizationCreditsExpiration calls per organization.
• Skipped null balance puts in listGrantBalance to avoid a ConcurrentHashMap NPE.

Pipelines​

• Refined workflow_updated events that contain no diff.
• Prevented duplicate GitHub credentials across PAT and GitHub App types.
• Resolved file paths to the most recent lineage record.

General​

• Fixed the expandable-text overlay to display only when text is truncated.
• Preserved panel search focus inside mat-menu.

Feature updates and improvements​

Compute environments​

• Added a CloudInfo cloud instance type catalog and chip-selector filters specification.
• Added a description field to the Compute Environment V2 form.

Datasets​

• Exposed dataset file size in version API responses.

Monitoring​

• Added a getCost failure metric.
• Rendered fractional Allocated CPU values on the Run Details metrics card.
• Added SCIM group audit logs.

Pipelines​

• Added a Nextflow syntax parser v2 toggle.
• Added launch-time settings to the workflow configuration tab.

Studios​

• Added the compute environment name to the Studios row card.
• Added new API endpoints to fetch compatible compute environments for a Studio and update the compute environment on a Studio.
• Enabled updating the compute environment on a Studio.
• Resolved the user on SSH Studio connection attempts.

Data Explorer​

• Cached the impersonated signer for WIF pre-signed URLs.

General​

• Introduced scroll-into-error behavior for the notification container component and unified the placement of message containers across form pages.
• Collapsed Settings breadcrumbs to two segments.
• Refined styling for the bordered variant of label values.
• Improved readability of usage chip icons on dark backgrounds.

Bug fixes​

Access control​

• Redirected on JWT expiry and stopped the onboarding polling loop.
• Auto-created organization membership during IdP group reconciliation.
• Polished the IdP group mapping UI.

Compute environments​

• Validated NVMe and Wave dependencies for Fusion v2.
• Split Forge disposal into separate resources and credentials phases.
• Ported the Forge disposal split to Azure and GCP.
• Clarified setRemoteAvailableCredits behavior and floored stale balance updates.
• Granted lineage store access to the forged AWS Batch role.
• Bumped the GCP default GPU image family to CUDA 12.9.
• Resolved the WIF credential owner context inside a read-only transaction.

Data Explorer​

• Supported GCS pre-signed URLs with WIF credentials in Data Explorer.

Pipelines​

• Disabled the lineage launch toggle when lineage settings are not configured or when the compute environment does not support lineage.
• Set the default value for Launch.syntaxParser to match the database schema.
• De-flaked the PipelineServiceTest agent revisions check.

Studios​

• Recovered legacy Studio event names in the usage query.
• Fell back to baseline Studio capabilities when the manifest is missing or the Studio version is not found in the manifest.

General​

• Pinned the Netty allocator to pooled to mitigate Micronaut 4.9 direct memory growth.
• Stopped ProviderUnrecoverableException from hiding JVM errors.
• Increased the polling timeout for the async audit image bundle test.

Feature updates and improvements​

Access control​

• Automatically disabled SSO on organization deletion.
• Enabled SSO domain verification.
• Skipped showcase workspace enrollment for free-tier users.

Compute environments​

• Added an export configuration option to the compute environment menu.

General​

• Added inactive scope styles and a settings breadcrumb trail.
• Aligned workspace settings routes and page titles.
• Updated workspace settings hub copy and added E2E selectors.
• Updated the labels page and modal type copy.

Bug fixes​

Compute environments​

• Fixed the compute environment edit form to skip name copy-rename when opened.

Data Explorer​

• Prevented bucket actions from becoming stuck in the CREATING state.

Studios​

• Fixed the redirection route for the Save as new Studio action.

Feature updates and improvements​

Compute environments​

• Added force-delete for stuck compute environments.
• Added an optional description field to compute environments.
• Added region name search to the Seqera Compute drop-down mwnu.

Pipelines​

• Added Nextflow lineage integration with indexing, API, and UI for browsing workflow lineage data.
• Added cron action source for scheduled pipeline launches.
• Added effectiveCpus and effectiveMemory helpers on Task.

Monitoring​

• Added GPU metrics.

General​

• Added automatic breadcrumb navigation in the page header.

Bug fixes​

Compute environments​

• Fixed AWS Batch child jobs to terminate on workflow cancellation.
• Added hpc6id to the NVMe instance families allowlist.

Data Explorer​

• Fixed 403 errors to surface properly when adding a data-link to a GCS bucket.
• Fixed text overflow in the Data Explorer modal.

Pipelines​

• Fixed cpuShares to vCPU conversion in Task.getEffectiveCpus.
• Fixed parameters being hidden in the launch form when hidden=false is set in nextflow_schema.json.

Access control​

• Fixed user metadata reading for name, surname, and organization fields.
• Fixed organization claim reading to use the namespaced claim instead of user_metadata.
• Classified DCR-registered OIDC clients as third-party.
• Updated the default refresh token expiration in OIDC.
• Fixed POST /metering to allow regular authenticated users.

Studios​

• Fixed the Studio form to enable buttons after valid input.
• Fixed the Mount data button to display on the Studios form.

General​

• Fixed copy icon position by pinning it to the top-right corner in code blocks.

Feature updates and improvements​

Access control​

• Added an Enterprise AI OAuth client parameter.
• Added the ability to edit workspaces from the admin panel.
• Added configurable access and refresh token expiration per client.
• Refined the copy in the SSO management section.

Compute environments​

• Added a compute instance types selector for AWS Cloud Scheduler.
• Aggregated CPU-hours in shares to preserve fractional allocations.

Pipelines​

• Added data lineage indexing.
• Enabled the AI debug button.

Platform API​

• Persisted requested CPU and memory values on WorkflowLoad.

Bug fixes​

Access control​

• Fixed frontend Cloud SSO feature handling.
• Updated the default refresh token expiration in OIDC.

Datasets​

• Fixed the dataset name maximum length in the frontend to match the backend.

Pipelines​

• Resolved a race condition in the Lineage section of task details.

Feature updates and improvements​

Compute environments​

• Replaced Azure Batch JobCleanupPolicy with DeleteTasks, DeleteJobs, and TerminateJob boolean options in the API.
• Added configurable head job CPUs and memory for Azure Batch.
• Renamed Instance type to Head instance type in AWS Cloud compute environments.

Pipelines​

• Added resourceAllocation to task data extension.
• Added bucket events to Actions.

Access control​

• Disabled collaborators for Cloud Pro SSO.
• Mapped Auth0 organization claim to user profile.
• Improved SSO collaborators and members error banners.

Bug fixes​

Pipelines​

• Fixed forbidden repository schema requests for shared pipelines.
• Fixed permission check for the browse button in the launch form.
• Added missing -X POST to the Action curl snippet.

General​

• Fixed resource labels value search in label suggestions.
• Added missing InputNormalizeDirective to the workspace form.

Feature updates and improvements​

Compute environments​

• Added support for separate head and worker pools in Azure Batch compute environments.
• Added the jobMaxWallClockTime option to Azure Batch compute environments.

Studios​

• Added the ability to edit a stopped Studio.

Access control​

• Decoupled the Auth0 Management API audience from the OIDC issuer to support custom Auth0 domains.

General​

• Introduced secondary tab navigation for organization and workspace pages.

Bug fixes​

Compute environments​

• Fixed Forge disposal failures being silently swallowed by propagating the underlying exceptions.
• Fixed job cancellation to be idempotent for already-canceled jobs.
• Fixed Azure Batch error handling to return an actionable message when the configured pool is missing.
• Fixed silently swallowed GCP Forge disposal failures by propagating the underlying exceptions.
• Fixed Azure Batch dual-pool mode to assign only the relevant managed identity to each pool.

Data explorer​

• Fixed IGV MIME type resolution in Data explorer.

Pipelines​

• Fixed the placement of the "compute environment not available" message in the pipeline form.

Studios​

• Fixed route URL mutation in the Studio resolver.